5-Methylcytosine

5-Methylcytosine is a methylated form of the DNA base cytosine (C) that regulates gene transcription and takes several other biological roles. When cytosine is methylated, the DNA maintains the same sequence, but the expression of methylated genes can be altered (the study of this is part of the field of epigenetics). 5-Methylcytosine is incorporated in the nucleoside 5-methylcytidine.

5-Methylcytosine
Names
Preferred IUPAC name
4-Amino-5-methylpyrimidin-2(1H)-one
Identifiers
3D model (JSmol)
3DMet
120387
ChEBI
ChemSpider
ECHA InfoCard 100.008.236
EC Number
  • 209-058-3
KEGG
MeSH 5-Methylcytosine
PubChem CID
UNII
  • InChI=1S/C5H7N3O/c1-3-2-7-5(9)8-4(3)6/h2H,1H3,(H3,6,7,8,9) Y
    Key: LRSASMSXMSNRBT-UHFFFAOYSA-N Y
  • InChI=1/C5H7N3O/c1-3-2-7-5(9)8-4(3)6/h2H,1H3,(H3,6,7,8,9)
    Key: LRSASMSXMSNRBT-UHFFFAOYAO
SMILES
  • O=C1/N=C\C(=C(\N)N1)C
  • Cc1cnc(=O)[nH]c1N
Properties
C5H7N3O
Molar mass 125.131 g·mol−1
Hazards
GHS labelling:
Warning
H317, H319
P261, P264, P272, P280, P302+P352, P305+P351+P338, P321, P333+P313, P337+P313, P363, P501
Except where otherwise noted, data are given for materials in their standard state (at 25 °C [77 °F], 100 kPa).
Y verify (what is YN ?)
Infobox references

In 5-methylcytosine, a methyl group is attached to the 5th atom in the 6-atom ring, counting counterclockwise from the NH-bonded nitrogen at the six o'clock position. This methyl group distinguishes 5-methylcytosine from cytosine.

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